| Pyoro | action game | Intelligent Systems, Nintendo Software Planning & Development, Nintendo Research & Development 1 |
| Pokémon Mystery Dungeon: Explorers of Sky | roguelike, role-playing video game | Chunsoft |
| Clu Clu Land | puzzle video game | Nintendo Research & Development 1 |
| PixelJunk Monsters | strategy video game | Q-Games |
| Super Paper Mario | role-playing video game, platform game | Intelligent Systems |
| Yoshi's Island DS | platform game | Artoon |
| Mario vs. Donkey Kong 2: March of the Minis | puzzle video game | Nintendo Software Technology |
| Animal Crossing: Wild World | social simulation game | Nintendo Entertainment Analysis & Development |
| The Legend of Zelda: The Minish Cap | role-playing video game | Capcom |
| Sonic Advance 3 | platform game | Sonic Team, Dimps |
| Phoenix Wright: Ace Attorney – Trials and Tribulations | adventure video game, visual novel | Capcom |
| Mega Man Zero 2 | action game | Inti Creates |
| Klonoa 2: Dream Champ Tournament | platform game | Namco |
| Family Tennis Advance | tennis video game | Winning Entertainment Group |
| F-Zero: Maximum Velocity | racing video game | Nintendo Cube |
| Sin and Punishment | shoot 'em up, rail shooter, science fiction video game | Treasure, Nintendo Research & Development 1 |
| The Legend of Zelda: Majora's Mask | action-adventure game | Nintendo Entertainment Analysis & Development |
| Fire Emblem: Thracia 776 | tactical role-playing game | Intelligent Systems |
| Donkey Kong Country 3: Dixie Kong's Double Trouble! | — | Rare Ltd. |
| Ogre Battle: The March of the Black Queen | tactical role-playing game, real-time tactics | Quest |
| Kunio-kun no Dodge Ball da yo: Zenin Shūgo | dodgeball video game | — |
| Brawl Brothers | beat 'em up | Jaleco |
| Soldier Blade | shoot 'em up | Hudson Soft |
| Final Fantasy Mystic Quest | role-playing video game | Square |
| Crash 'n' the Boys: Street Challenge | sports video game | Technōs Japan |
| Romancing SaGa | role-playing video game | Square |
| Famicom Tantei Club Part II: Ushiro ni Tatsu Shōjo | adventure video game | Tose Co. |
| Vs. Excitebike | racing video game | — |
| Gradius | shoot 'em up | Konami |
| Act it Out | — | Snap Finger Click |
| Mighty No. 9 | — | Inti Creates |
| Skylanders: Imaginators | action-adventure game | Toys for Bob |
| SteamWorld Heist | turn-based strategy video game, turn-based tactics | Image & Form |
| Lovely Planet | action game | — |
| Fast & Furious: Showdown | — | Firebrand Games |
| Your Shape: Fitness Evolved 2013 | — | — |
| Phoenix Wright: Ace Attorney – Justice for All | adventure video game, visual novel | Capcom |
| Phoenix Wright: Ace Attorney | adventure video game, visual novel | Capcom |
| Heisei Shin Onigashima | — | — |
| Image Fight II: Operation Deepstriker | vertically scrolling shooter | — |
| Little Ninja Brothers | action role-playing game | Culture Brain |
| Hiryū no Ken | fighting game | — |
| Balloon Fight | action game, platform game | HAL Laboratory, Nintendo Research & Development 1 |
| Scribblenauts Unmasked: A DC Comics Adventure | crossover fiction, emergent gameplay | 5th Cell |